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13F-HR filed by BAKER BROS. ADVISORS LP

BAKER BROS. ADVISORS LP filed this 13F-HR for the quarter ended 2016-09-30, filed 2016-11-14, with 134 holding rows worth $11,019,928,000.

Accession
0001144204-16-134352
Filed
2016-11-14
Accepted by EDGAR
acceptance time not in the bulk data set
Ingested
Source
SEC quarterly data set

Original filing

13F report for Q3 2016

A holdings report, 134 entries on the cover page, a total value of $11,019,928,000 stated on the cover page (in dollars after the unit check, H1), rows summing to $11,019,928,000 with VALUE read as thousands by filing date, 13F file number 028-10519. The quarter's positions are built on this report. The resolved quarter.

The information table after summing rows of one CUSIP and put or call (H4), with the CUSIP and issuer name as filed. Values in dollars after the unit check (method).

Issuer as filedCUSIPClassAmountValueValue read asType
SEATTLE GENETICS INC812578102COM44,100,294$2,381,857,000thousands by filing date
INCYTE CORP COM45337C102Stock23,498,898$2,215,711,000thousands by filing date
AbbVie,Inc.00287Y109COM14,343,358$904,636,000thousands by filing date
ACADIA PHARMACEUTICALS INC004225108COM25,819,768$821,327,000thousands by filing date
ALEXION PHARMACEUTICALS INC015351109COM6,543,295$801,815,000thousands by filing date
Incyte Corporation45337CAL6NOTE 1.25% 11/15/2020274,500,000$531,244,000thousands by filing dateprincipal
Incyte Corporation45337CAK8NOTE 0.375% 11/15/2018259,000,000$491,344,000thousands by filing dateprincipal
BIOMARIN PHARMACEUTICAL INC09061G101COM4,806,483$444,696,000thousands by filing date
GENOMIC HEALTH, INC.37244C101COM13,770,302$398,237,000thousands by filing date
DBV TECHNOLOGIES S A23306J101ADR5,509,560$200,162,000thousands by filing date
AQUINOX PHARMACEUTICALS INC03842B101COM10,536,092$140,762,000thousands by filing date
BIOMARIN PHARMACEUTICAL INC09061GAD3CNV22,379,000$101,405,000thousands by filing dateprincipal
BELLICUM PHARMACEUTICALS INC079481107COM4,865,647$96,826,000thousands by filing date
CERUS CORP157085101COM13,053,275$81,061,000thousands by filing date
SPARK THERAPEUTICS INC84652J103COM1,318,341$79,180,000thousands by filing date
ACORDA THERAPEUTICS INC00484M106COM3,661,082$76,443,000thousands by filing date
CLOVIS ONCOLOGY INC189464AB6NOTE 2.500% 9/172,758,000$69,135,000thousands by filing dateprincipal
AMARIN CORP PLC023111206SPONS ADR NEW20,630,477$65,811,000thousands by filing date
EXELIXIS INC COM30161Q104Stock4,929,494$63,048,000thousands by filing date
ACORDA THERAPEUTICS INC00484MAA4NOTE 1.750% 6/177,083,000$62,830,000thousands by filing dateprincipal
BEONE MEDICINES LTD SPONSORED ADS07725L102ADR1,912,680$58,930,000thousands by filing date
INVITAE CORP46185L103COM6,554,967$57,422,000thousands by filing date
HERON THERAPEUTICS INC427746102COM2,857,250$49,230,000thousands by filing date
BIOCRYST PHARMACEUTICALS INC COM09058V103Stock10,963,944$48,351,000thousands by filing date
NEUROCRINE BIOSCIENCES INC64125C109COM895,422$45,344,000thousands by filing date
ADVANCED ACCELERATOR APPLIC SPONSORED ADS00790T100ADR1,029,247$39,194,000thousands by filing date
VERSARTIS INC92529L102COM2,134,247$26,145,000thousands by filing date
PROGENICS PHARMACEUTICALS IN743187106COM3,650,808$23,110,000thousands by filing date
FOAMIX PHARMACEUTICALS LTDM46135105SHS2,466,702$22,842,000thousands by filing date
ARRAY BIOPHARMA INC COM04269X105Stock3,310,666$22,347,000thousands by filing date
XENCOR INC98401F105COMMON STOCK872,072$21,357,000thousands by filing date
HALOZYME THERAPEUTICS INC COM40637H109Stock1,731,057$20,911,000thousands by filing date
ACHILLION PHARMACEUTICALS IN00448Q201COM2,475,515$20,052,000thousands by filing date
BLUEBIRD BIO INC09609G100COM293,943$19,923,000thousands by filing date
MERUS N VN5749R100COM1,160,014$19,430,000thousands by filing date
SANGAMO THERAPEUTICS INC800677106COM4,055,876$18,779,000thousands by filing date
INTELLIA THERAPEUTICS INC45826J105COM1,062,120$18,077,000thousands by filing date
IDERA PHARMACEUTICALS INC45168K306COM7,014,015$17,956,000thousands by filing date
DERMA SCIENCES INC249827502COM PAR $.013,752,390$17,524,000thousands by filing date
AEGERION PHARMACEUTICALS INC00767EAB8NOTE 2.000 8/126,517,000$17,432,000thousands by filing dateprincipal
LAKEFRONT BIOTHERAPEUTICS NV36315X101SPON ADR259,894$16,805,000thousands by filing date
TG THERAPEUTICS INC COM88322Q108Stock2,003,991$15,511,000thousands by filing date
MIRATI THERAPEUTICS INC60468T105COM2,269,198$14,999,000thousands by filing date
ASCENDIS PHARMA A/S DKK 1.0 AD04351P101SPONSORED ADR745,521$14,985,000thousands by filing date
BIOMARIN PHARMACEUTICAL INC09061GAE1NOTE 0.750%10/112,228,000$14,630,000thousands by filing dateprincipal
ARROWHEAD PHARMACEUTICALS IN04280A100COM1,856,967$13,649,000thousands by filing date
VITAE PHARMACEUTICALS INC92847N103COM637,597$13,339,000thousands by filing date
ALKERMES PLCG01767105SHS250,251$11,769,000thousands by filing date
ZOGENIX INC.98978L204Common Stock1,000,000$11,430,000thousands by filing date
AERIE PHARMACEUTICALS INC00771V108COM299,356$11,298,000thousands by filing date
DERMIRA INC24983L104COM326,428$11,040,000thousands by filing date
AGIOS PHARMACEUTICALS INC00847X104COM207,915$10,982,000thousands by filing date
MACROGENICS INC556099109COM363,676$10,878,000thousands by filing date
AIMMUNE THERAPEUTICS INC.00900T107Common Stock673,908$10,109,000thousands by filing date
CONTRAFECT CORP212326102COM4,045,876$10,034,000thousands by filing date
DIMENSION THERAPEUTICS INC25433V105COM1,251,881$10,003,000thousands by filing date
SAGE THERAPEUTICS INC78667J108COM208,328$9,594,000thousands by filing date
INTRA-CELLULAR THERAPIES INC46116X101COMMON STOCK609,166$9,284,000thousands by filing date
IMMUNOGEN INC45253H101COMMON STOCK3,015,353$8,081,000thousands by filing date
LIGAND PHARMACEUTICALS INC53220K504COM NEW73,386$7,490,000thousands by filing date
ALDER BIOPHARMACEUTICALS INC014339105COM217,328$7,122,000thousands by filing date
ULTRAGENYX PHARMACEUTICAL IN90400D108COM100,000$7,094,000thousands by filing date
INOTEK PHARMACEUTICALS CORP45780VAB8NOTE 5.750% 8/05,000,000$6,708,000thousands by filing dateprincipal
TRILLIUM THERAPEUTICS INC COM NEW89620X506Stock413,697$6,120,000thousands by filing date
INSMED INC COM PAR $.01457669307Stock400,000$5,808,000thousands by filing date
Alcobra LtdM2239P109SHS2,336,359$5,771,000thousands by filing date
PROQR THERAPEUTICS NVN71542109SHS EURO860,464$5,739,000thousands by filing date
NEURODERM LTDM74231107ORD SHS305,000$5,639,000thousands by filing date
CATALYST PHARMACEUTICALS INC14888U101COM5,102,153$5,561,000thousands by filing date
NATERA INC COM632307104Stock450,000$5,000,000thousands by filing date
Medgenics Inc New58436Q203COM NEW880,539$4,905,000thousands by filing date
AKARI THERAPEUTICS PLC00972G108ADR496,901$4,229,000thousands by filing date
MINERVA NEUROSCIENCES INC COM NEW603380106Stock258,805$3,653,000thousands by filing date
STEMLINE THERAPEUTICS INC85858C107COM333,497$3,612,000thousands by filing date
LOXO ONCOLOGY INC548862101COM137,735$3,606,000thousands by filing date
IGNYTA INC451731103COM571,000$3,592,000thousands by filing date
ARRAY BIOPHARMA INC04269XAA3NOTE 3.000% 6/03,000,000$3,561,000thousands by filing dateprincipal
SUNESIS PHARMACEUTICALS INC867328700COM741,665$3,241,000thousands by filing date
CONCERT PHARMACEUTICALS INC206022105COM316,976$3,205,000thousands by filing date
TREVENA INC89532E109COM450,000$3,038,000thousands by filing date
SYROS PHARMACEUTICALS INC87184Q107COM204,465$2,836,000thousands by filing date
ADAMAS PHARMACEUTICALS INC00548A106COM172,630$2,833,000thousands by filing date
PROTEON THERAPEUTICS INC74371L109COM298,591$2,786,000thousands by filing date
GLYCOMIMETICS INC38000Q102COM381,235$2,726,000thousands by filing date
INVIVO THERAPEUTICS HLDGS CO46186M209COM NEW400,000$2,720,000thousands by filing date
ENDOCYTE INC29269A102COM868,983$2,685,000thousands by filing date
AEGLEA BIOTHERAPEUTICS INC00773J103COM404,230$2,591,000thousands by filing date
SELECTA BIOSCIENCES INC816212104COM178,950$2,550,000thousands by filing date
OSIRIS THERAPEUTICS INC NEW68827R108COM499,193$2,476,000thousands by filing date
NABRIVA THERAPEUTICS AG62957M104SPONSORED ADR350,000$2,468,000thousands by filing date
JUNO THERAPEUTICS INC48205A109COM80,000$2,401,000thousands by filing date
PROTALIX BIOTHERAPEUTICS INC74365AAB7NOTE 4.500% 9/13,423,000$2,294,000thousands by filing dateprincipal
EPIZYME INC29428V104COM232,481$2,288,000thousands by filing date
KARYOPHARM THERAPEUTICS INC48576U106COM216,990$2,111,000thousands by filing date
IONIS PHARMACEUTICALS INC COM462222100Stock57,140$2,094,000thousands by filing date
ENANTA PHARMACEUTICALS INC29251M106COM75,357$2,005,000thousands by filing date
SCYNEXIS INC COM NEW811292101Common Stock467,600$1,810,000thousands by filing date
ASSEMBLY BIOSCIENCES INC045396108COM250,000$1,803,000thousands by filing date
UNIQURE NVN90064101SHS230,000$1,760,000thousands by filing date
MEDIWOUND LTDM68830104ORD SHS226,000$1,740,000thousands by filing date
OPHTHOTECH CORP683745103COM35,649$1,644,000thousands by filing date
MYOKARDIA INC62857M105COM100,000$1,634,000thousands by filing date
SERES THERAPEUTICS INC81750R102COM125,000$1,536,000thousands by filing date
PALATIN TECHNOLOGIES INC696077403COM PAR $ .012,050,000$1,289,000thousands by filing date
CELLECTIS ADS15117K103COM50,000$1,204,000thousands by filing date
COLUCID PHARMACEUTICALS INC19716T101COM30,310$1,156,000thousands by filing date
FULGENT GENETICS INC359664109COM125,000$1,153,000thousands by filing date
IMMUNE DESIGN CORP.45252L103Common Stock148,937$1,129,000thousands by filing date
AFFIMED N VN01045108COM400,000$1,112,000thousands by filing date
ALDEYRA THERAPEUTICS INC01438T106COM142,000$1,110,000thousands by filing date
ACCELERON PHARMA INC00434H108COM28,765$1,041,000thousands by filing date
FIVE PRIME THERAPEUTICS INC.33830X104Common Stock19,247$1,010,000thousands by filing date
TENAX THERAPEUTICS INC88032L100COM420,000$972,000thousands by filing date
MAST THERAPEUTICS INC576314108COM8,584,051$944,000thousands by filing date
APTOSE BIOSCIENCES INC COM03835T200Stock404,211$909,000thousands by filing date
INFINITY PHARMACEUTICALS INC45665G303COM580,400$905,000thousands by filing date
DYNAVAX TECHNOLOGIES CORP268158201COM NEW75,000$787,000thousands by filing date
ALNYLAM PHARMACEUTICALS INC COM02043Q107Stock11,340$769,000thousands by filing date
MADRIGAL PHARMACEUTICALS INC COM558868105Stock57,762$732,000thousands by filing date
ADAPTIMMUNE THERAPEUTICS PLC00653A107SPONDS ADR100,000$705,000thousands by filing date
RITTER PHARMACEUTICALS INC767836109COM400,000$672,000thousands by filing date
WINDTREE THERAPEUTICS INC97382D105COM254,973$653,000thousands by filing date
CHIMERIX INC COM16934W106Stock115,216$638,000thousands by filing date
Arbutus Biopharma Corp03879J100Common Shares, without par value180,582$621,000thousands by filing date
ABEONA THERAPEUTICS INC00289Y107COM101,680$610,000thousands by filing date
BIODELIVERY SCIENCES INTL IN09060J106COM210,021$567,000thousands by filing date
Foundation Medicine Inc350465100COM20,892$488,000thousands by filing date
ACHAOGEN INC004449104COM100,000$479,000thousands by filing date
CYTRX CORP232828509COM PAR $.001659,995$388,000thousands by filing date
Sierra Oncology, Inc.74346L101common200,000$364,000thousands by filing date
LA JOLLA PHARMACEUTICAL CO503459604COM PAR $.0001 213,746$327,000thousands by filing date
CHEMOCENTRYX INC16383L106COM49,064$296,000thousands by filing date
BIO GREEN MED SOL 6pcnt PFDCONV23254L207COMMON STOCK13,253$90,000thousands by filing date
BIOTIME INC09066L162W EXP 10/01/20120,084$17,000thousands by filing date

Amendment chain

FilingRoleFiledAcceptedIngested
13F-HR 0001144204-16-134352this filing2016-11-14acceptance time not in the bulk data set